Publications

         2016_____________________________________________________________________

• Ibrokhim Y. Abdurakhmonov, Mirzakamol Ayubov, Khurshida A. Ubaydullaeva, Zabardast T. Buriev, Shukhrat E. Shermatov, Haydarali Ruziboev, Umid M. Shapulatov, Sukumar Saha, Mauricio Ulloa, John Z. Yu, Richard G. Percy; Eric J. Devor, Govind C. Sharma, Venkateswara R.Sripathi Siva P. Kumpatla, Alexander van der Kroll, Hake D. Kater, Khakimjon Khamidov, Shavkat I. Salikhov, Johnie N. Jenkins, Abdusattor Abdukarimov, Alan E. Pepper. RNA interference for functional genomics and improvement of cotton (Gossypium spp.). Frontier in Plant Sciences.    
  http://journal.frontiersin.org/article/10.3389/fpls.2016.00202/abstract

          2015_____________________________________________________________________

• Shapulatov U. M., Z. T. Buriev, M. Ulloa, S. Saha, E. J. Devor, M. S. Ayubov, T. M. Norov, S. E. Shermatov, A. Abdukarimov, J. N. Jenkins, I. Y. Abdurakhmonov. Characterization of Small RNAs and Their Targets from Fusarium oxysporum Infected and Noninfected Cotton Root Tissues. Plant Molecular Biology Reporter. September 2015.
• Darmanov M.M., Makamov A.Kh., Kushanov F.N., Buriev Z.T., Abdurakhmonov I.Y. Marker-Assisted Selection for Cotton. // VIII Innovation ideas and technologies International form” paper, 2015. The proceeding of Tashkent International Innovation Forum. Tashkent. 19-21 May, Р.260-26.
• Ayubov M. S., Buriev Z.T., X. Ubaydullaeva, U. Shapulatov, T. Norov, M. Mirzaakhmedov, D. Usmonov, I.Y. Abdurakhmonov. Morphological characteristics of cotton PHYB gene specific RNAi lines obtained using synthetic RNAi cassette and somatic transformation. “VIII Innovation ideas and technologies International form” paper, 2015. P. 272-276.              

          2014_____________________________________________________________________

• Ibrokhim Y. Abdurakhmonov, Alisher A. Abdullaev, Zabardast T. Buriev, Shukhrat E. Shermatov,Fahriddin N. Kushanov, Abdusalom  X. Makamov, Umid M. Shapulatov, Sharof S. Egamberdiev, Ilkhom B. Salakhutdinov, Mirzakamol S. Ayubov, Mukhtor M. Darmanov,Azoda T. Adylova, Sofiya M. Rizaeva, Fayzulla A. Abdullaev, Shadman A. Namazov, Malohat S. Khalikova, Hakimdjon A. Saydaliev, Viktor A. Avtonomov, Marina S. Sanamyan, Tillaboy K. Duiesenov, Jura A. Musaev, Abdumavlyan A. Abdullaev and Abdusattor Abdukarimov.2014.Cotton Germplasm Collection of Uzbekistan, World Cotton GermplasmResources, Dr. Ibrokhim Abdurakhmonov (Ed.), ISBN: 978-953-51-1622-6, InTech,DOI: 10.5772/58590.Available from: http://www.intechopen.com/books/world-cotton-germplasm-resources/cotton-germplasm-collection-of-uzbekistan.
• Abdurakhmonov IY, Zabardast T. Buriev, Saha S, Jenkins JN, Abdusattor Abdukarimov, Pepper AE. 2014. Cotton PHYA1 RNAi enhances major fiber quality and agronomic traits of cotton (Gossypium hirsutum L). Nature Communications 4:3062; DOI:10. 1038/ncomms4062.

          2013_____________________________________________________________________

• Feruza  I. Babadjanova, Khurshida A, Ubaydullaeva, Mirzakamol S. Ayubov, Larina L.A., Zabardast T. Buriev, Ibrokhim Y. Abdurakhmonov. Realizing regenerated plants from potato using somatic embryogenesis. Report of Khorezm Ma mun academy, 2/2013.(in Uzbek).
• Umidjon M. Shapulatov, Shermatov Sh.E., Mirzakamol S. Ayubov, Zabardast T. Buriev, Mukhammadjon X. Mirzakhmedov , Adylova A. , acad. Abdusattor Abdukarimov, Ibrokhim Y. Abdurakhmonov. Extraction and identification of micro RNAs from Fusarium oxysporum infected cotton root tissue. The report of Academy of Science of Uzbekistan 2013/2. (in Uzbek).
• I.Y. Abdurakhmonov, Zabardast T. Buriev, S. Saha, J.N. Jenkins, Abdusattor Abdukarimov, A.E. Pepper. 2013. Cotton PHYA1 RNAi enhances major fibre quality and agronomic traits of cotton (Gossypium hirsutum L.). Nature Communications. 5: 3062

         2012_____________________________________________________________________

• Ibrokhim Y. Abdurakhmonov, Zabardast T. Buriev, Shukhrat E. Shermatov, Alisher A. Abdullaev, Khurshid A. Urmonov, Fakhriddin N. Kushanov, Sharof S. Egamberdiev, Umid M. Shapulatov,Abdusаttor Abdukarimov, Sukumar Saha, Johnnie Jenkins, Russell Kohel, John Yu, Alan Pepper, Siva Kumpatla and Mauricio Ulloa.2012.Genetic diversity in Gossypium genus. In Genetic diversity book edited by Mahmut ÇALIŞKAN. InTech, Croatia
  
  2011_____________________________________________________________________
  
  
• Zabardast T. Buriev, Saha S, Shukhrat E. Shermatov, Jenkins JN, Abdusattor Abdukarimov , Stelly DM, Ibrokhim Y. Abdurakhmonov. Molecular evolution of the clustered MIC-3 multigene family of Gossypium species// Theor Appl Genet. 2011 Aug 18. 123:1359-1373.
• Zabardast T. Buriev, Saha S, Shermatov SE, Jenkins JN, Abdusattor Abdukarimov, Stelly DM, Ibrokhim Y. Abdurakhmonov(corresponding author). Molecular evolution of the clustered MIC-3 multigene family of Gossypium species. Theor Appl Genet. 2011 Aug 18. [Epub ahead of print] PubMed PMID: 21850479.

         2010_____________________________________________________________________

• Ibrokhim Y. Abdurakhmonov, Zabardast T. Buriev, Logan-Young CJ,  Abdusattor Abdukarimov, Pepper AE. 2010. Duplication, divergence and persistence in the Phytochrome photoreceptor gene family of cottons (Gossypium spp.). BMC Plant Biol. 10:119. 
• Buriev ZT, Saha S, Ibrokhim Y. Abdurakhmonov, Jenkins JN,  Abdusattor Abdukarimov, Scheffler BE, Stelly DM. 2010. Clustering, haplotype diversity, and locations of MIC-3, a unique root-specific defense-related gene family in Upland Cotton (Gossypium hirsutum L). Theor Appl Genet 120(3):587-606 (*equally contributed as a fist author). 

         2009_____________________________________________________________________

• Ibrokhim Y. Abdurakhmonov, S. Saha, J.N. Jenkins, Zabardast T. Buriev, Shukhrat E. Shermatov. Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm.Genetica 2009. 136:401–417.
• Mavlonov GT, Ibrokhim Y. Abdurakhmonov, Abdusattor Abdukarimov, Kantety R, and Sharma G. 2009. The Characterization of Major Proteins Expressed in Roots of Four Gossypium Species. J. Cot Sci. 13:256– 264
• Devor EJ, Ibrokhim Y. Abdurakhmonov, Zlojutro M, Millis MP, Galbraith JJ, Crawford MH, Shermatov S, Zabardast T. Buriev and Abdusattor Abdukarimov. 2009. Gene flow at the crossroads of humanity: mtDNA sequence diversity and Alu insertion polymorphism frequencies in Uzbekistan. The Open Genomics Journal 2:1- 11. 
• Mavlonov GT, Khurshida A, Ubaydullaeva, Rakhmanov M, Ibrokhim Y. Abdurakhmonov, Abdusattor Abdukarimov . 2009. Chitinbinding antifungal protein from Ficus garcia latex. Chemistry of Natural Compounds 44:216-219. 
• Ibrokhim Y. Abdurakhmonov, Saha S, Jenkins JN, Zabardast T. Buriev, Shermatov SE, Scheffler BE,Pepper AE, Yu JZ, Kohel RJ, Abdukarimov A. 2009. Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm. Genetica 136(3):401-17, DOI 10.1007/s10709-008-9337-8. 
• Devor EJ, Huang L, Abdusattor Abdukarimov, Ibrokhim Y. Abdurakhmonov(corresponding author). 2009. Methodologies for in vitro cloning of small RNAs from plant genomes. International Journal of Plant Genomics. 2008:91506. 
• Haydarali T. Ruziboev, Zabardast T. Buriev, Mirzakamol S. Ayubov, Ibrokhim Y. Abdurakhmonov, Abdusattor Abdukarimov. Development of candidate markers and association DNA markers on the root-knot nematode resistance cotton varieties. Problems of Bioorganic chemistry. Proceedings of VI Republican Conference of young scientists. Namangan, Uzbekistan. November 20-21, 2009.pp 53. (in Russian).

         2008_____________________________________________________________________

• Ibrokhim Y. Abdurakhmonov, Devor EJ, Zabardast T. Buriev, Huang L, Abdusalom X. Makamov, Shukhrat E. Shermatov.Small RNA regulation of ovule development in the cotton plant, G. hirsutum L. BMC Plant Biol. 2008 Sep 16;8(1):93.
• Ibrokhim Y. Abdurakhmonov, R. J. Kohel, J. Z. Yu, A. E. Pepper, A. A. Abdullaev, F.N. Kushanov, I. B. Salakhutdinov,Zabardast T. Buriev, S. Saha, B. E. Scheffler, J. N. Jenkins,Abdusattor Abdukarimov. Molecular diversity and association mapping of fiberquality traits in exotic G. hirsutum L. germplasm // Genomics. doi:10.1016/j.ygeno.2008
• Ibrokhim Y. Abdurakhmonov, Kohel RJ, Yu JZ, Pepper AE, Abdullaev AA, Kushanov FN, Salakhutdinov IB, Zabardast T. Buriev, Saha S Scheffler BE, Jenkins JN, and Abdusattor Abdukarimov. 2008. Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm. Genomics 92(6):478-87, doi:10.1016/j.ygeno.208.07.013 
• Ibrokhim Y. Abdurakhmonov, Devor EJ, Zabardast T. Buriev, Huang L, Makamov A, Shermatov SE, Bozorov T, Kushanov FN, Mavlonov GT, Abdusattor Abdukarimov. 2008. Small RNA regulation of ovule development in the cotton plant, G. hirsutum L. BMC Plant Biology 8:93. 
• Ibrokhim Y. Abdurakhmonov, and Abdusattor Abdukarimov. Application of association mapping to understanding the genetic diversity of plant germplasm resources. 2008. International Journal of Plant Genomics.2008:574927, 2008.